Alignment Stats
| Sequence pairs analysed in total |
286024 |
| Paired-end alignments with a unique best hit |
237856 |
| Pairs without alignments under any condition |
45934 |
| Pairs that did not map uniquely |
2234 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
6955907 |
| Methylated C's in CpG context |
35652 |
| Methylated C's in CHG context |
21214 |
| Methylated C's in CHH context |
53718 |
| Methylated C's in Unknown context |
92 |
| Unmethylated C's in CpG context |
337762 |
| Unmethylated C's in CHG context |
1695790 |
| Unmethylated C's in CHH context |
4811771 |
| Unmethylated C's in Unknown context |
851 |
| Percentage methylation (CpG context) |
9.5% |
| Percentage methylation (CHG context) |
1.2% |
| Percentage methylation (CHH context) |
1.1% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
118044 |
original top strand |
| CTOT |
149 |
complementary to original top strand |
| CTOB |
167 |
complementary to original bottom strand |
| OB |
119496 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
237856 |
| Unique alignments |
237654 |
| Duplicates removed |
202 |
| Duplicated alignments were found at 191 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
6793330 |
| Methylated C's in CpG context |
34291 |
| Methylated C's in CHG context |
19528 |
| Methylated C's in CHH context |
48921 |
| Unmethylated C's in CpG context |
330159 |
| Unmethylated C's in CHG context |
1657899 |
| Unmethylated C's in CHH context |
4702532 |
| Percentage methylation (CpG context) |
9.4% |
| Percentage methylation (CHG context) |
1.2% |
| Percentage methylation (CHH context) |
1.0% |
|
|
M-Bias Plot
