Alignment Stats
| Sequence pairs analysed in total |
283704 |
| Paired-end alignments with a unique best hit |
239274 |
| Pairs without alignments under any condition |
42415 |
| Pairs that did not map uniquely |
2015 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
7128860 |
| Methylated C's in CpG context |
66502 |
| Methylated C's in CHG context |
22641 |
| Methylated C's in CHH context |
47754 |
| Methylated C's in Unknown context |
69 |
| Unmethylated C's in CpG context |
324562 |
| Unmethylated C's in CHG context |
1745372 |
| Unmethylated C's in CHH context |
4922029 |
| Unmethylated C's in Unknown context |
804 |
| Percentage methylation (CpG context) |
17.0% |
| Percentage methylation (CHG context) |
1.3% |
| Percentage methylation (CHH context) |
1.0% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
119012 |
original top strand |
| CTOT |
64 |
complementary to original top strand |
| CTOB |
87 |
complementary to original bottom strand |
| OB |
120111 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
239274 |
| Unique alignments |
239101 |
| Duplicates removed |
173 |
| Duplicated alignments were found at 167 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
7000484 |
| Methylated C's in CpG context |
65207 |
| Methylated C's in CHG context |
21659 |
| Methylated C's in CHH context |
45197 |
| Unmethylated C's in CpG context |
318949 |
| Unmethylated C's in CHG context |
1714851 |
| Unmethylated C's in CHH context |
4834621 |
| Percentage methylation (CpG context) |
17.0% |
| Percentage methylation (CHG context) |
1.2% |
| Percentage methylation (CHH context) |
0.9% |
|
|
M-Bias Plot
