Alignment Stats
| Sequence pairs analysed in total |
284809 |
| Paired-end alignments with a unique best hit |
237003 |
| Pairs without alignments under any condition |
45582 |
| Pairs that did not map uniquely |
2224 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
6988271 |
| Methylated C's in CpG context |
259296 |
| Methylated C's in CHG context |
27227 |
| Methylated C's in CHH context |
64239 |
| Methylated C's in Unknown context |
72 |
| Unmethylated C's in CpG context |
106022 |
| Unmethylated C's in CHG context |
1702470 |
| Unmethylated C's in CHH context |
4829017 |
| Unmethylated C's in Unknown context |
765 |
| Percentage methylation (CpG context) |
71.0% |
| Percentage methylation (CHG context) |
1.6% |
| Percentage methylation (CHH context) |
1.3% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
118544 |
original top strand |
| CTOT |
79 |
complementary to original top strand |
| CTOB |
88 |
complementary to original bottom strand |
| OB |
118292 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
237003 |
| Unique alignments |
236814 |
| Duplicates removed |
189 |
| Duplicated alignments were found at 183 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
6800209 |
| Methylated C's in CpG context |
252143 |
| Methylated C's in CHG context |
26190 |
| Methylated C's in CHH context |
61340 |
| Unmethylated C's in CpG context |
103262 |
| Unmethylated C's in CHG context |
1657146 |
| Unmethylated C's in CHH context |
4700128 |
| Percentage methylation (CpG context) |
70.9% |
| Percentage methylation (CHG context) |
1.6% |
| Percentage methylation (CHH context) |
1.3% |
|
|
M-Bias Plot
