Alignment Stats
| Sequence pairs analysed in total |
297213 |
| Paired-end alignments with a unique best hit |
249687 |
| Pairs without alignments under any condition |
45460 |
| Pairs that did not map uniquely |
2066 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
7578890 |
| Methylated C's in CpG context |
53981 |
| Methylated C's in CHG context |
18123 |
| Methylated C's in CHH context |
50537 |
| Methylated C's in Unknown context |
85 |
| Unmethylated C's in CpG context |
358119 |
| Unmethylated C's in CHG context |
1852945 |
| Unmethylated C's in CHH context |
5245185 |
| Unmethylated C's in Unknown context |
1134 |
| Percentage methylation (CpG context) |
13.1% |
| Percentage methylation (CHG context) |
1.0% |
| Percentage methylation (CHH context) |
1.0% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
124683 |
original top strand |
| CTOT |
403 |
complementary to original top strand |
| CTOB |
355 |
complementary to original bottom strand |
| OB |
124246 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
249687 |
| Unique alignments |
249538 |
| Duplicates removed |
149 |
| Duplicated alignments were found at 148 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
7121539 |
| Methylated C's in CpG context |
50657 |
| Methylated C's in CHG context |
16918 |
| Methylated C's in CHH context |
46703 |
| Unmethylated C's in CpG context |
336933 |
| Unmethylated C's in CHG context |
1743035 |
| Unmethylated C's in CHH context |
4927293 |
| Percentage methylation (CpG context) |
13.1% |
| Percentage methylation (CHG context) |
1.0% |
| Percentage methylation (CHH context) |
0.9% |
|
|
M-Bias Plot
