Alignment Stats
| Sequence pairs analysed in total |
295267 |
| Paired-end alignments with a unique best hit |
249367 |
| Pairs without alignments under any condition |
43691 |
| Pairs that did not map uniquely |
2209 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
7894007 |
| Methylated C's in CpG context |
88475 |
| Methylated C's in CHG context |
72912 |
| Methylated C's in CHH context |
178365 |
| Methylated C's in Unknown context |
107 |
| Unmethylated C's in CpG context |
376554 |
| Unmethylated C's in CHG context |
1876650 |
| Unmethylated C's in CHH context |
5301051 |
| Unmethylated C's in Unknown context |
1507 |
| Percentage methylation (CpG context) |
19.0% |
| Percentage methylation (CHG context) |
3.7% |
| Percentage methylation (CHH context) |
3.3% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
124341 |
original top strand |
| CTOT |
1120 |
complementary to original top strand |
| CTOB |
983 |
complementary to original bottom strand |
| OB |
122923 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
249367 |
| Unique alignments |
249187 |
| Duplicates removed |
180 |
| Duplicated alignments were found at 175 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
7339831 |
| Methylated C's in CpG context |
82153 |
| Methylated C's in CHG context |
67691 |
| Methylated C's in CHH context |
165309 |
| Unmethylated C's in CpG context |
349950 |
| Unmethylated C's in CHG context |
1746774 |
| Unmethylated C's in CHH context |
4927954 |
| Percentage methylation (CpG context) |
19.0% |
| Percentage methylation (CHG context) |
3.7% |
| Percentage methylation (CHH context) |
3.2% |
|
|
M-Bias Plot
