FastQCFastQC Report
Tue 28 May 2024
SRR11806588_sub500000_chr19_R1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11806588_sub500000_chr19_R1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences299959
Sequences flagged as poor quality0
Sequence length20-100
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATG15570.5190709396950917TruSeq Adapter, Index 5 (100% over 49bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCGCGTATG6080.2026943682303248TruSeq Adapter, Index 5 (97% over 49bp)
TCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTA3540.1180161288709457TruSeq Adapter, Index 5 (100% over 47bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)